This course covers the fundamentals of bioinformatics, including biological information, microbiome science, Python 3 programming, pairwise sequence alignment, Linux command line, regular expressions, sequence homology searching, microbiome analysis methods, machine learning in bioinformatics, and reproducible bioinformatics. The course aims to teach students the essential skills and tools required in bioinformatics through a series of lectures. The intended audience for this course includes students and professionals interested in bioinformatics, microbiome science, and biological data analysis.
Overview
Syllabus
Biological Information (part 1).
Biological Information (part 2).
An Introduction to Microbiome Science (part 1).
An Introduction to Microbiome Science (part 2).
A quick introduction to Python 3 programming (part 1).
A quick introduction to Python 3 programming (part 2).
A quick introduction to Python 3 programming (part 3).
A quick introduction to Python 3 programming (part 4).
Pairwise Sequence Alignment (part 1).
Pairwise Sequence Alignment (part 2).
Pairwise Sequence Alignment (part 3).
A quick introduction to working on the Linux command line.
Text manipulation with regular expressions (part 1).
Text manipulation with regular expressions (part 2).
Sequence Homology Searching (part 1).
Sequence Homology Searching (part 2).
Sequence Homology Searching (part 3).
Microbiome Analysis Methods (part 1).
Microbiome Analysis Methods (part 2).
Microbiome Analysis Methods (part 3).
Machine learning in bioinformatics (part 1).
Machine learning in bioinformatics (part 2).
Getting help with bioinformatics software.
Reproducible Bioinformatics.
Taught by
QIIME 2
