This course on Post-Genome Assembly aims to teach learners how to annotate bacterial genomes using tools like PROKKA and PGAP. The course covers skills such as genome visualization with Artemis and CGView, identifying genetic elements like insertion sequences and antimicrobial resistance genes, and building phylogenetic trees using RAxML, iTOL, MUSCLE, and PhyML. The teaching method includes hands-on tutorials and demonstrations. This course is intended for beginners in bioinformatics who are interested in genome assembly, annotation, and comparative genomics of bacterial genomes.
Overview
Syllabus
A bioinformatics tutorial on genome annotation of bacterial genomes using PROKKA (updated video).
Genome Visualization using Artemis (DNAPlotter) | Bioinformatics for Beginners | Course | Tutorial.
Bioinformatics for beginners | Course | Genome Assembly and Annotation | Bacterial Genomes | Prokka.
Bioinformatics for beginners | Course | Genome Assembly and annotation using PGAP | Tutorial.
Bioinformatics for Beginners| HOW TO IDENTIFY INSERTION SEQUENCE ELEMENTS IN GENOMES | ISFINDER.
Bioinformatics for Beginners | Course | Genome visualization using the online CGView tool.
Hands-on bioinformatics tutorial on Pangenome analysis of bacterial genomes | Beginners Course.
A bioinformatics tutorial on how to identify Antimicrobial Resistance Genes | Abricate | Beginners.
A bioinformatics tutorial on how to Identify Virulence Factors in Genomes using Abricate | Beginners.
How to Build Phylogenetic Trees using RAxML and iTOL | Bioinformatics for Beginners |Tutorial.
Visualize phylogenetic trees using iTOL.
Build Phylogenetic Trees based on Gene Sequences.
Build Phylogenetic trees with MUSCLE and PhyML.
Variant Calling using BCFTOOLS | BCFTOOLS Tutorial | Bioinformatics for Beginners | Course.
Variant Calling using Snippy | Microbial Bioinformatics | Bioinformatics for Beginners | Course.
A bioinformatics tutorial on Bacterial Genome Analysis | Comparative Genomics.
A bioinformatics tutorial on Genome comparison using BRIG software.
Taught by
Bioinformatics Coach
