Completed
Date: Tue, 20 August 2019, 15:00 to
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Classroom Contents
Sequence Alignment - Hidden Markov Models, Category Theory and All That Jazz by Soumyashant Nayak
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- 1 Date: Tue, 20 August 2019, 15:00 to
- 2 Sequence Aligment: Hidden Markov Models, Category Theory and all that jazz
- 3 An Overview of Sequence Alignment
- 4 Central Dogma
- 5 Sequences of Interest
- 6 exon Exon
- 7 Mutations Sequence Alterations
- 8 What is Sequence Alignment?
- 9 Why care about sequence alignment?
- 10 Pairwise Sequence Alignment
- 11 Global Alignment vs. Local Alignment
- 12 Needleman-Wunsch Algorithm 1970
- 13 Smith-Waterman algorithm 1981
- 14 Pseudo-alignment for quantification
- 15 Remarks on accuracy of kallisto
- 16 Idealized coverage & Realistic coverage
- 17 Blast
- 18 Hidden Markov Models
- 19 Multiple Sequence Alignment
- 20 The Main Problem
- 21 Next Steps
- 22 Acknowledgments
- 23 Thank You!
- 24 Q&A
