This course teaches learners how to install various bioinformatics tools using different methods such as source code, binaries, and Anaconda. The course covers installation processes for tools like Artemis, RAxML, MUSCLE, PhyML, vcftools, SRA Toolkit, BCFTOOLS, Java, GNU Parallel, spades, GATK, Burrows-Wheeler Aligner (BWA), HISAT2, and Bowtie2. The intended audience for this course includes beginners and individuals interested in bioinformatics who want to learn how to set up and install bioinformatics tools on different operating systems.
Overview
Syllabus
Bioinformatics Tools | How to Install Artemis in Windows using binaries.
How to Install RAxML using Anaconda.
Install MUSCLE in Linux | using binaries.
How to Install RAxML in Linux | using the source code.
Install PhyML in Linux | using binaries.
Install PhyML using Anaconda.
Quickly Install and use Linux in Windows.
Install python packages with anaconda | Python Tutorial for Beginners | Getting Started with Python.
How to install R , Rstudio & R packages in Linux (Ubuntu).
Install vcftoosl in Linux using anaconda.
Install vcftools in Linux using Anaconda.
How to setup toolkit using anaconda.
Install vcftools in Linux using Anaconda.
How to Install SRA Toolkit on ANY Linux Machine using a single file|Simple Guide | Linux | Binaries.
Install BCFTOOLS in Linux using anaconda | A Simple Guide for Beginners.
Install java in linux using binaries | OPENJDK.
How to Install GNU Parallel using Anaconda | Linux.
Install GNU Parallel from source code | Linux.
How to Install Java in Windows using OPENJDK binaries.
Install JAVA SE in Windows | bioinformatics coach.
How to Install Artemis in Linux.
A bioinformatics tutorial on how to Install BRIG in Windows.
How to install BCFTOOLS in Linux | Build from source | A simple Guide for Beginners.
Bioinformatics Tools | Genome Assembly | Install spades in linux using anaconda.
Bioinformatics Tools | How to Install Software Packages with conda | Beginners | Getting Started.
Bioinformatics Tools | Install samtools by building from source.
Bioinformatics Tools | Install samtools using binaries.
Bioinformatics Tools | Install samtools using anaconda.
Install and Configure Anaconda in MacOS | GUI Installer.
Bioinformatics Tools | How to Install GATK | Binaries.
Bioinformatics Tools | How to Install Burrows-Wheeler Aligner(BWA) in Linux using Anaconda.
Bioinformatics Tools | How to Install Burrows-Wheeler Aligner(BWA) | build from source.
Bioinformatics Tools | How to Install Burrows-Wheeler Aligner(BWA) | Binaries.
Install Bioinformatics Tools | HISAT2 | conda.
Install Bioinformatics Tools | HISAT2 | binaries.
Install Bioinformatics Tools | HISAT2 | build from source.
Install Bioinformatics Tools in less than 1 minute | Episode 1 | Bowtie2 | Binaries.
Taught by
Bioinformatics Coach
