This course teaches learners how to download data from biological databases such as TCGA and NCBI using Python and R. The course covers data mining techniques, downloading gene expression data, and converting Ensembl IDs to gene symbols. The teaching method includes tutorials and practical demonstrations. This course is intended for beginners in bioinformatics who are interested in learning data mining skills for biological databases.
Overview
Syllabus
Bioinformatics for beginners | Course | Download data from TCGA database | Data Mining | Tutorial.
Bioinformatics for Beginners | Download Normal & Tumor gene expression data | tcga database | Python.
Download Sequences from NCBI using your Browser.
Python for Bioinformatics | Download sequences from NCBI.
How to DOWNLOAD Sequence data using SRA toolkit | NCBI | SRA | Bioinformatics tutorial | Part 1.
How to DOWNLOAD Sequence data using SRA toolkit | NCBI | SRA | Bioinformatics tutorial | Part 2.
R for Bioinformatics | Convert Ensembl IDs to Gene Symbols | Episode 1 | R biomaRt.
Biological Databases | Where and how to download Gene Expression Data | Bioinformatics for Beginners.
Taught by
Bioinformatics Coach
