This course teaches how to work with VCF files using bcftools, including reading, indexing, extracting, renaming chromosomes, counting SNPs and indels, extracting sample IDs, variant calling, and splitting VCF files. The course aims to develop skills in bioinformatics analysis using bcftools. The teaching method involves tutorials and practical demonstrations. The intended audience includes beginners in bioinformatics or individuals looking to enhance their skills in handling genetic variation data.
Overview
Syllabus
How to read VCF files using bcftools tutorial | Bioinformatics for Beginners | Course.
How to read VCF files using bcftools | indexing VCFs.
How to read VCF files using bcftools | Extract and view chromosome names.
Rename chromosomes in a VCF file using bcftools.
BCFTOOLS tutorial on how to count the number of snps and indels in a vcf file | Bioinformatics.
Extract sample ids from vcf files using bcftools | Bioinformatics Tutorial.
Variant Calling using BCFTOOLS | BCFTOOLS Tutorial | Bioinformatics for Beginners | Course.
Bioinformatics Tutorial: Count the number of variants per chromosome in a VCF file using bcftools.
Bioinformatics Tutorial | Split a VCF file into snps and indels using bcftools- full tutorial.
Split or Subset VCF files based on Sample IDs using bcftools.
Taught by
Bioinformatics Coach
