This course teaches how to manipulate VCF files using bcftools, including reading, indexing, extracting, renaming chromosomes, variant calling, counting variants, and splitting files. The course aims to help learners develop skills in bioinformatics, Linux, variant calling, and data manipulation. The teaching method includes tutorials and practical demonstrations. The intended audience for this course is beginners in bioinformatics looking to enhance their data analysis skills.
Overview
Syllabus
How to read VCF files using bcftools tutorial | Bioinformatics for Beginners | Course.
How to read VCF files using bcftools | indexing VCFs.
Linux for Bioinformatics | How to count the number variants in a VCF file | Beginners Course.
How to read VCF files using bcftools | Extract and view chromosome names.
Rename chromosomes in a VCF file using bcftools.
Variant Calling using Snippy | Microbial Bioinformatics | Bioinformatics for Beginners | Course.
BCFTOOLS tutorial on how to count the number of snps and indels in a vcf file | Bioinformatics.
Extract sample ids from vcf files using bcftools | Bioinformatics Tutorial.
Variant Calling using BCFTOOLS | BCFTOOLS Tutorial | Bioinformatics for Beginners | Course.
Bioinformatics Tutorial: Count the number of variants per chromosome in a VCF file using bcftools.
Bioinformatics Tutorial | Split a VCF file into snps and indels using bcftools- full tutorial.
Split or Subset VCF files based on Sample IDs using bcftools.
Taught by
Bioinformatics Coach
